Detailed information of SNP:
|
SNP ID:
sf0422555965(Gbrowse)
Chromosome: chr04 Position: 22555965 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 78.90% | 21.10% |
| All Indica | 784 | 70.41% | 29.59% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 16 | 6.25% | 93.75% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 206 | 64.56% | 35.44% |
| Indica Intermediate | 203 | 67.98% | 32.02% |
| Temperate Japonica | 335 | 91.04% | 8.96% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422555965 | T->C | INTERGENIC | None |