Detailed information of SNP:
|
SNP ID:
sf0422822689(Gbrowse)
Chromosome: chr04 Position: 22822689 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 94.54% | 5.46% |
| All Indica | 784 | 99.23% | 0.77% |
| All Japonica | 497 | 87.12% | 12.88% |
| Aus | 55 | 92.73% | 7.27% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 205 | 98.54% | 1.46% |
| Indica Intermediate | 204 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422822689 | A->G | INTERGENIC | None |