Detailed information of SNP:
|
SNP ID:
sf0422962627(Gbrowse)
Chromosome: chr04 Position: 22962627 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.15% | 26.85% |
| All Indica | 799 | 72.09% | 27.91% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 76.12% | 23.88% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422962627 | A->C | INTERGENIC | None |