Detailed information of SNP:
|
SNP ID:
sf0422975159(Gbrowse)
Chromosome: chr04 Position: 22975159 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 78.91% | 21.09% |
| All Indica | 799 | 71.84% | 28.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0422975159 | T->C | LOC_Os04g38990(LOC_Os04g38990.1) | INTRON |