Detailed information of SNP:
|
SNP ID:
sf0423179911(Gbrowse)
Chromosome: chr04 Position: 23179911 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 96.91% | 3.09% |
| All Indica | 774 | 99.10% | 0.90% |
| All Japonica | 463 | 93.74% | 6.26% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 194 | 96.91% | 3.09% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 98.11% | 1.89% |
| Tropical Japonica | 82 | 73.17% | 26.83% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423179911 | T->A | LOC_Os04g39270(LOC_Os04g39270.1) | INTRON |