Detailed information of SNP:
|
SNP ID:
sf0423182031(Gbrowse)
Chromosome: chr04 Position: 23182031 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1299 | 57.74% | 42.26% |
| All Indica | 743 | 72.27% | 27.73% |
| All Japonica | 438 | 26.48% | 73.52% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 354 | 96.89% | 3.11% |
| Indica II | 191 | 26.70% | 73.30% |
| Indica Intermediate | 198 | 72.22% | 27.78% |
| Temperate Japonica | 302 | 14.24% | 85.76% |
| Tropical Japonica | 75 | 66.67% | 33.33% |
| Japonica Intermediate | 61 | 37.70% | 62.30% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423182031 | T->A | LOC_Os04g39280(LOC_Os04g39280.2) | UTR_3_PRIME |