Detailed information of SNP:
|
SNP ID:
sf0423209627(Gbrowse)
Chromosome: chr04 Position: 23209627 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 91.68% | 8.32% |
| All Indica | 767 | 99.87% | 0.13% |
| All Japonica | 464 | 78.23% | 21.77% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 359 | 99.72% | 0.28% |
| Indica II | 203 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 70.70% | 29.30% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 59 | 86.44% | 13.56% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423209627 | A->G | INTERGENIC | None |