Detailed information of SNP:
|
SNP ID:
sf0423222234(Gbrowse)
Chromosome: chr04 Position: 23222234 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1147 | 92.76% | 7.24% |
| All Indica | 679 | 100.00% | 0.00% |
| All Japonica | 366 | 80.33% | 19.67% |
| Aus | 53 | 100.00% | 0.00% |
| Indica I | 302 | 100.00% | 0.00% |
| Indica II | 176 | 100.00% | 0.00% |
| Indica Intermediate | 201 | 100.00% | 0.00% |
| Temperate Japonica | 250 | 74.00% | 26.00% |
| Tropical Japonica | 70 | 98.57% | 1.43% |
| Japonica Intermediate | 46 | 86.96% | 13.04% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423222234 | A->C | INTERGENIC | None |