Detailed information of SNP:
|
SNP ID:
sf0423300970(Gbrowse)
Chromosome: chr04 Position: 23300970 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 78.07% | 21.93% |
| All Indica | 798 | 63.66% | 36.34% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 31.20% | 68.80% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423300970 | C->T | INTERGENIC | None |