Detailed information of SNP:
|
SNP ID:
sf0423350439(Gbrowse)
Chromosome: chr04 Position: 23350439 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 71.51% | 28.49% |
| All Indica | 791 | 51.83% | 48.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 80.97% | 19.03% |
| Indica II | 210 | 18.57% | 81.43% |
| Indica Intermediate | 208 | 33.17% | 66.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423350439 | G->A | LOC_Os04g39530(LOC_Os04g39530.1) | Non-Synonymous SNP |