Detailed information of SNP:
|
SNP ID:
sf0423351044(Gbrowse)
Chromosome: chr04 Position: 23351044 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.87% | 29.13% |
| All Indica | 798 | 50.75% | 49.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 210 | 32.38% | 67.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423351044 | A->G | LOC_Os04g39530(LOC_Os04g39530.1) | Non-Synonymous SNP |