Detailed information of SNP:
|
SNP ID:
sf0423351991(Gbrowse)
Chromosome: chr04 Position: 23351991 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 71.20% | 28.80% |
| All Indica | 783 | 50.57% | 49.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 205 | 17.56% | 82.44% |
| Indica Intermediate | 203 | 32.02% | 67.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423351991 | G->T | LOC_Os04g39530(LOC_Os04g39530.1) | Non-Synonymous SNP |