Detailed information of SNP:
|
SNP ID:
sf0423353838(Gbrowse)
Chromosome: chr04 Position: 23353838 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1314 | 82.88% | 17.12% |
| All Indica | 698 | 69.48% | 30.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 350 | 89.71% | 10.29% |
| Indica II | 174 | 37.93% | 62.07% |
| Indica Intermediate | 174 | 60.34% | 39.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423353838 | G->A | INTERGENIC | None |