Detailed information of SNP:
|
SNP ID:
sf0423365852(Gbrowse)
Chromosome: chr04 Position: 23365852 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 66.50% | 33.50% |
| All Indica | 797 | 43.91% | 56.09% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 210 | 23.33% | 76.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423365852 | T->C | INTERGENIC | None |