Detailed information of SNP:
|
SNP ID:
sf0423398370(Gbrowse)
Chromosome: chr04 Position: 23398370 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 70.06% | 29.94% |
| All Indica | 789 | 48.29% | 51.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 205 | 8.29% | 91.71% |
| Indica Intermediate | 209 | 24.40% | 75.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423398370 | A->T | LOC_Os04g39570(LOC_Os04g39570.1) | INTRON |