Detailed information of SNP:
|
SNP ID:
sf0423454844(Gbrowse)
Chromosome: chr04 Position: 23454844 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 50.25% | 49.75% |
| All Indica | 777 | 15.57% | 84.43% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 355 | 23.66% | 76.34% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 209 | 13.40% | 86.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423454844 | T->A | INTERGENIC | None |