Detailed information of SNP:
|
SNP ID:
sf0423466442(Gbrowse)
Chromosome: chr04 Position: 23466442 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1308 | 84.48% | 15.52% |
| All Indica | 697 | 71.88% | 28.12% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 341 | 86.80% | 13.20% |
| Indica II | 165 | 44.24% | 55.76% |
| Indica Intermediate | 191 | 69.11% | 30.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423466442 | G->A | INTERGENIC | None |