Detailed information of SNP:
|
SNP ID:
sf0423478841(Gbrowse)
Chromosome: chr04 Position: 23478841 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 56.61% | 43.39% |
| All Indica | 795 | 25.66% | 74.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 32.89% | 67.11% |
| Indica II | 212 | 12.74% | 87.26% |
| Indica Intermediate | 209 | 25.84% | 74.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423478841 | G->A | INTERGENIC | None |