Detailed information of SNP:
|
SNP ID:
sf0423480553(Gbrowse)
Chromosome: chr04 Position: 23480553 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 96.66% | 3.34% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 477 | 94.97% | 5.03% |
| Aus | 48 | 58.33% | 41.67% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 75.58% | 24.42% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423480553 | C->T | LOC_Os04g39710(LOC_Os04g39710.1) | SNPs that introduce stop codons |