Detailed information of SNP:
|
SNP ID:
sf0423490373(Gbrowse)
Chromosome: chr04 Position: 23490373 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 63.56% | 36.44% |
| All Indica | 777 | 90.22% | 9.78% |
| All Japonica | 489 | 23.93% | 76.07% |
| Aus | 61 | 39.34% | 60.66% |
| Indica I | 358 | 89.11% | 10.89% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 329 | 26.14% | 73.86% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423490373 | A->G | LOC_Os04g39730(LOC_Os04g39730.1) | INTRON |