Detailed information of SNP:



SNP ID: sf0423506817(Gbrowse)

Chromosome: chr04

Position: 23506817
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 99.15% 0.85%
All Indica799 100.00% 0.00%
All Japonica497 97.59% 2.41%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 97.01% 2.99%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0423506817 C->T LOC_Os04g39760(LOC_Os04g39760.1) Synonymous