Detailed information of SNP:
|
SNP ID:
sf0423567510(Gbrowse)
Chromosome: chr04 Position: 23567510 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 51.31% | 48.69% |
| All Indica | 797 | 16.94% | 83.06% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 209 | 16.27% | 83.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423567510 | C->T | LOC_Os04g39880(LOC_Os04g39880.1) | Non-Synonymous SNP |
| sf0423567510 | C->T | LOC_Os04g39880(LOC_Os04g39880.2) | Non-Synonymous SNP |