Detailed information of SNP:
|
SNP ID:
sf0423632186(Gbrowse)
Chromosome: chr04 Position: 23632186 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.44% | 45.56% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423632186 | G->A | INTERGENIC | None |