Detailed information of SNP:
|
SNP ID:
sf0423686425(Gbrowse)
Chromosome: chr04 Position: 23686425 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 57.62% | 42.38% |
| All Indica | 785 | 97.32% | 2.68% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 365 | 96.99% | 3.01% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423686425 | T->G | LOC_Os04g40090(LOC_Os04g40090.1) | INTRON |