Detailed information of SNP:
|
SNP ID:
sf0423691439(Gbrowse)
Chromosome: chr04 Position: 23691439 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 83.05% | 16.95% |
| All Indica | 796 | 72.11% | 27.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423691439 | C->T | LOC_Os04g40100(LOC_Os04g40100.1) | Synonymous |