Detailed information of SNP:
|
SNP ID:
sf0423706066(Gbrowse)
Chromosome: chr04 Position: 23706066 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 52.01% | 47.99% |
| All Indica | 797 | 90.46% | 9.54% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423706066 | C->T | INTERGENIC | None |