Detailed information of SNP:
|
SNP ID:
sf0423714001(Gbrowse)
Chromosome: chr04 Position: 23714001 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.35% | 38.65% |
| All Indica | 799 | 32.67% | 67.33% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 9.07% | 90.93% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423714001 | T->G | LOC_Os04g40160(LOC_Os04g40160.1) | INTRON |