Detailed information of SNP:
SNP ID:
sf0423716522(Gbrowse)
Chromosome: chr04 Position: 23716522 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 61.04% | 38.96% |
All Indica | 798 | 32.46% | 67.54% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 8.80% | 91.20% |
Indica II | 212 | 73.58% | 26.42% |
Indica Intermediate | 211 | 33.18% | 66.82% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0423716522 | C->T | INTERGENIC | None |