Detailed information of SNP:
SNP ID:
sf0423717810(Gbrowse)
Chromosome: chr04 Position: 23717810 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 94.50% | 5.50% |
All Indica | 798 | 93.36% | 6.64% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 71.64% | 28.36% |
Indica I | 374 | 93.05% | 6.95% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 211 | 89.57% | 10.43% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0423717810 | A->G | INTERGENIC | None |