Detailed information of SNP:
|
SNP ID:
sf0423721392(Gbrowse)
Chromosome: chr04 Position: 23721392 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 93.51% | 6.49% |
| All Indica | 798 | 92.23% | 7.77% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423721392 | C->T | INTERGENIC | None |