Detailed information of SNP:
|
SNP ID:
sf0423738474(Gbrowse)
Chromosome: chr04 Position: 23738474 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 83.88% | 16.12% |
| All Indica | 794 | 72.04% | 27.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 209 | 77.03% | 22.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423738474 | A->G | LOC_Os04g40210(LOC_Os04g40210.1) | Synonymous |