Detailed information of SNP:
|
SNP ID:
sf0423796871(Gbrowse)
Chromosome: chr04 Position: 23796871 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 60.85% | 39.15% |
| All Indica | 790 | 33.80% | 66.20% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 370 | 9.19% | 90.81% |
| Indica II | 210 | 80.95% | 19.05% |
| Indica Intermediate | 210 | 30.00% | 70.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423796871 | C->T | INTERGENIC | None |