Detailed information of SNP:



SNP ID: sf0423796871(Gbrowse)

Chromosome: chr04

Position: 23796871
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1410 60.85% 39.15%
All Indica790 33.80% 66.20%
All Japonica497 100.00% 0.00%
Aus67 73.13% 26.87%
Indica I370 9.19% 90.81%
Indica II210 80.95% 19.05%
Indica Intermediate210 30.00% 70.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0423796871 C->T INTERGENIC None