Detailed information of SNP:
|
SNP ID:
sf0423860840(Gbrowse)
Chromosome: chr04 Position: 23860840 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.71% | 49.29% |
| All Indica | 798 | 26.07% | 73.93% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 1.87% | 98.13% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 211 | 23.22% | 76.78% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423860840 | T->C | LOC_Os04g40460(LOC_Os04g40460.1) | INTRON |