Detailed information of SNP:
|
SNP ID:
sf0423865392(Gbrowse)
Chromosome: chr04 Position: 23865392 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.76% | 37.24% |
| All Indica | 798 | 35.21% | 64.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 9.87% | 90.13% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423865392 | T->G | LOC_Os04g40470(LOC_Os04g40470.1) | Non-Synonymous SNP |