Detailed information of SNP:
|
SNP ID:
sf0423871856(Gbrowse)
Chromosome: chr04 Position: 23871856 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.41% | 39.59% |
| All Indica | 799 | 31.16% | 68.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 4.00% | 96.00% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423871856 | G->A | LOC_Os04g40490(LOC_Os04g40490.1) | Synonymous |