Detailed information of SNP:
|
SNP ID:
sf0423889974(Gbrowse)
Chromosome: chr04 Position: 23889974 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1235 | 72.79% | 27.21% |
| All Indica | 795 | 98.11% | 1.89% |
| All Japonica | 330 | 20.30% | 79.70% |
| Aus | 61 | 36.07% | 63.93% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 215 | 27.44% | 72.56% |
| Tropical Japonica | 68 | 0.00% | 100.00% |
| Japonica Intermediate | 47 | 17.02% | 82.98% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 36 | 69.44% | 30.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423889974 | G->A | INTERGENIC | None |