Detailed information of SNP:
|
SNP ID:
sf0423908509(Gbrowse)
Chromosome: chr04 Position: 23908509 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 84.05% | 15.95% |
| All Indica | 791 | 74.08% | 25.92% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 206 | 76.21% | 23.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423908509 | A->G | INTERGENIC | None |