Detailed information of SNP:
|
SNP ID:
sf0423908544(Gbrowse)
Chromosome: chr04 Position: 23908544 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 56.89% | 43.11% |
| All Indica | 788 | 96.95% | 3.05% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 55 | 14.55% | 85.45% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 207 | 94.69% | 5.31% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423908544 | T->G | INTERGENIC | None |