Detailed information of SNP:
|
SNP ID:
sf0423922675(Gbrowse)
Chromosome: chr04 Position: 23922675 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.02% | 45.98% |
| All Indica | 798 | 23.93% | 76.07% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 1.60% | 98.40% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 211 | 17.06% | 82.94% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423922675 | G->C | INTERGENIC | None |