Detailed information of SNP:
|
SNP ID:
sf0423933632(Gbrowse)
Chromosome: chr04 Position: 23933632 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.75% | 44.25% |
| All Indica | 798 | 26.19% | 73.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 1.87% | 98.13% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 20.00% | 80.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423933632 | C->A | INTERGENIC | None |