Detailed information of SNP:
|
SNP ID:
sf0423964708(Gbrowse)
Chromosome: chr04 Position: 23964708 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 89.95% | 10.05% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 486 | 73.25% | 26.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 327 | 64.83% | 35.17% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423964708 | T->C | INTERGENIC | None |