Detailed information of SNP:
|
SNP ID:
sf0423994096(Gbrowse)
Chromosome: chr04 Position: 23994096 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.38% | 38.62% |
| All Indica | 799 | 34.79% | 65.21% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 13.07% | 86.93% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 31.28% | 68.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423994096 | G->A | INTERGENIC | None |