Detailed information of SNP:
|
SNP ID:
sf0423996055(Gbrowse)
Chromosome: chr04 Position: 23996055 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.07% | 4.93% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0423996055 | A->T | LOC_Os04g40740(LOC_Os04g40740.3) | INTRON |
| sf0423996055 | A->T | LOC_Os04g40740(LOC_Os04g40740.4) | INTRON |
| sf0423996055 | A->T | LOC_Os04g40740(LOC_Os04g40740.2) | INTRON |
| sf0423996055 | A->T | LOC_Os04g40740(LOC_Os04g40740.1) | INTRON |