Detailed information of SNP:
|
SNP ID:
sf0424000523(Gbrowse)
Chromosome: chr04 Position: 24000523 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 95.13% | 4.87% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424000523 | T->A | LOC_Os04g40740(LOC_Os04g40740.2) | INTRON |
| sf0424000523 | T->A | LOC_Os04g40740(LOC_Os04g40740.1) | INTRON |