Detailed information of SNP:
|
SNP ID:
sf0424093928(Gbrowse)
Chromosome: chr04 Position: 24093928 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 97.10% | 2.90% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 470 | 91.70% | 8.30% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 95.38% | 4.62% |
| Tropical Japonica | 84 | 78.57% | 21.43% |
| Japonica Intermediate | 61 | 90.16% | 9.84% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424093928 | C->T | INTERGENIC | None |