Detailed information of SNP:
|
SNP ID:
sf0424228642(Gbrowse)
Chromosome: chr04 Position: 24228642 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 82.02% | 17.98% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 488 | 57.58% | 42.42% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 76.44% | 23.56% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 64 | 31.25% | 68.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424228642 | A->G | INTERGENIC | None |