Detailed information of SNP:
|
SNP ID:
sf0424639745(Gbrowse)
Chromosome: chr04 Position: 24639745 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 85.97% | 14.03% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 492 | 69.92% | 30.08% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 90.69% | 9.31% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424639745 | G->A | INTERGENIC | None |