Detailed information of SNP:
|
SNP ID:
sf0424643074(Gbrowse)
Chromosome: chr04 Position: 24643074 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.84% | 43.16% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424643074 | C->T | INTERGENIC | None |