Detailed information of SNP:
|
SNP ID:
sf0424739057(Gbrowse)
Chromosome: chr04 Position: 24739057 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.44% | 45.56% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424739057 | G->A | LOC_Os04g42100(LOC_Os04g42100.1) | Synonymous |