Detailed information of SNP:
|
SNP ID:
sf0424741274(Gbrowse)
Chromosome: chr04 Position: 24741274 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1289 | 58.57% | 41.43% |
| All Indica | 676 | 26.63% | 73.37% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 301 | 35.22% | 64.78% |
| Indica II | 193 | 9.33% | 90.67% |
| Indica Intermediate | 182 | 30.77% | 69.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0424741274 | G->A | INTERGENIC | None |